PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008240071.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 524aa    MW: 57201.5 Da    PI: 8.5509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008240071.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.97.4e-18219268255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  XP_008240071.1 219 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 268
                     889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-24214289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-19216288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-15219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-15219271No hitNo description
SMARTSM003531.5E-13223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MGKKCIAKEE TSVEISTAEK PASHAAASAA AQPTSSVEHV LPGGIGTYTI SHISYFNQRV  60
PKPEGSPVFT VTQAQASSTD RNVEEHSNCS SYTGSGFTLW EESALKNKGK TGKENLGERP  120
VGIVRGQWTS SERPAQSSSN NHRNCFSAQS SGQKNISFME MMKSAAKGST QEDELDDEEE  180
FVLKKETSTT TTTATTPYKG DLRVKVDVKS SDQKANTPRS KHSATEQRRR SKINDRFQML  240
RELIPHSDQK RDKASFLLEV IEYIQFLQEK VDKYEGSYQG WNPDPAKLMP WQRNNPKLRE  300
SYCDQSRGMN GGSGTALVFA AKFDEKTTSV SPSIPGSCAQ NPVESDTSTE TTFKAMDHHP  360
GITSKPMPFP LSMQPNFFTP VGSGGAAVPQ LPPRLPSDAE NTSQHQSMLC HTVSRATDGA  420
AARDKLKEQE LTIEDGRINI SSAYSQGLLN TLTQALQNSG VDLSQASISV QIELGKRGNS  480
RSPIPKSVVK DNEILSSNQG KRHSRVASGE DSEHAPKKLK TGRN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240071.10.0PREDICTED: transcription factor BIM1 isoform X3
SwissprotQ9LEZ31e-116BIM1_ARATH; Transcription factor BIM1
TrEMBLM5WEB40.0M5WEB4_PRUPE; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-114bHLH family protein